Publications

Title

Journal / Conference

Year

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

Scientific reports

2019

Downregulation of Extracellular Matrix and Cell Adhesion Molecules in Cumulus Cells of Infertile Polycystic Ovary Syndrome Women With and Without Insulin Resistance

Cell J (Yakhteh)

2019

An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells

Journal of cellular and molecular medicine

2019

Disease severity in respiratory syncytial virus infection: Role of host genetic variation

Reviews in medical virology

2019

The interplay between vitamin D and viral infections

Reviews in medical virology

2019

Induction of protective immune response to intranasal administration of influenza virus‐like particles in a mouse model

Journal of cellular physiology

2019

Molecular characterization of the fusion protein in human respiratory syncytial virus subgroup A: Emergence of ON-1 genotype in Iran.

Infection, genetics and evolution: journal of molecular epidemiology and evolutionary genetics in infectious diseases

2019

Molecular characterization of the glycoprotein and fusion protein in human respiratory syncytial virus subgroup A: Emergence of ON-1 genotype in Iran

Infection, Genetics and Evolution

2019

GTED: Graph Traversal Edit Distance

International Conference on Research in Computational Molecular Biology

2018

Enhanced Waddington Landscape Model with Cell-Cell Communication Can Explain Molecular Mechanisms of Self-Organization

Accepted By Bioinformatics Journal

2018

Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning

Under Review

2018

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians

Zoological letters

2018

Multivariate Analysis and Visualization using R Package muvis

arXiv preprint arXiv:1810.12184

2018

Pin1 Regulatory miRNAs as Novel Candidates for Alzheimer's Disease Treatment

bioRxiv

2018

A Novel Workflow for Health Survey Analysis: Results on the Yazd Health Study (YaHS)

bioRxiv

2018

Effects of cannabinoid receptor type 2 in respiratory syncytial virus infection in human subjects and mice

Virulence

2018

Blocking of opioid receptors in experimental formaline-inactivated respiratory syncytial virus (FI-RSV) immunopathogenesis: from beneficial to harmful impacts

Medical microbiology and immunology

2018

The role of cannabinoid receptor 1 in the immunopathology of respiratory syncytial virus

Viral immunology

2018

Investigation of the Cellular Immune Response to Recombinant Fragments of Filamentous Hemagglutinin and Pertactin of Bordetella pertussis in BALB/c Mice

Journal of Interferon & Cytokine Research

2018

Anti-Inflammatory microRNAs and their potential for inflammatory diseases treatment

Frontiers in immunology

2018

Correction to: Blocking of opioid receptors in experimental formaline-inactivated respiratory syncytial virus (FI-RSV) immunopathogenesis: from beneficial to harmful impacts.

Medical microbiology and immunology

2018

The role of expression and activity of 15-Lipoxygenase isoforms and related cytokines in patients with Multiple Sclerosis and healthy controls

Journal of neuroimmunology

2018

Evaluation of the Potential Association Between Cannabinoid Receptor 2 Gene Q63R Polymorphism (Rs35761398) and Risk of RDS Development in Preterm Neonates

IRANIAN JOURNAL OF PEDIATRICS

2018

Comparative in vitro evaluation of human dental pulp and follicle stem cell commitment

Cell Journal (Yakhteh)

2017

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

Scientific reports

2017

Blockage of the epithelial-to-mesenchymal transition is required for embryonic stem cell derivation

Stem cell reports

2017

Small RNA sequencing reveals Dlk1-Dio3 locus-embedded microRNAs as major drivers of ground-state pluripotency

Stem cell reports

2017

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast

Scientific reports

2017

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

BMC genomics

2017

Evaluation of the expression level of 12/15 lipoxygenase and the related inflammatory factors (CCL5, CCL3) in respiratory syncytial virus infection in mice model

Microbial pathogenesis

2017

Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study

The Lancet

2017

Molecular Epidemiology of Human Respiratory Syncytial Virus in Iranian≥ 60 Years old Hospitalized Patients with Acute Respiratory Symptoms.

Archives of Iranian Medicine (AIM)

2017

Targeting human breast cancer cells by an oncolytic adenovirus using microRNA-targeting strategy

Virus research

2017

No genetic association between A118G polymorphism of μ-opioid receptor gene and schizophrenia and bipolar disorders

Indian Journal of Psychiatry

2017

Sodium butyrate promotes apoptosis in breast cancer cells through reactive oxygen species (ROS) formation and mitochondrial impairment

Lipids in health and disease

2017

Enhancement of Hepatitis E Virus DNA Vaccine Immunity by Beclin-1-Mediated Autophagy

Jundishapur Journal of Microbiology

2017

PRODROMES & PRIMAR

Indian Journal of Psychiatry

2017

Distribution of Genes Encoding Toxin, Adhesion, and Antibacterial Resistance Among Various SCCmec Types of Methicillin-Resistant Staphylococcus aureus Isolated From Intensive Care Unit, Tehran, Iran

Jundishapur Journal of Microbiology

2017

Inferring causal molecular networks: empirical assessment through a community-based effort

Nature methods

2016

Effects of cannabinoids and their receptors on viral infections

Journal of medical virology

2016

Prevalence of human respiratory syncytial virus circulating in Iran

Journal of infection and public health

2016

Potential siRNA molecules for nucleoprotein and M2/L overlapping region of respiratory syncytial virus: In silico design

Jundishapur journal of microbiology

2016

Involvement of 15-lipoxygenase-1 in the regulation of breast cancer cell death induced by sodium butyrate

Cytotechnology

2016

Opioids and viral infections: a double-edged sword

Frontiers in microbiology

2016

The role of microRNAs in respiratory viral infection: friend or foe?

Reviews in medical virology

2016

Selective replication of miR-145-regulated oncolytic adenovirus in MCF-7 breast cancer cells

Future Virology

2016

Inhibition of respiratory syncytial virus replication by simultaneous targeting of mRNA and genomic RNA using dual-targeting siRNAs

Molecular biotechnology

2016

Comparison of neutralizing antibody titers against outbreak-associated measles genotypes (D4, H1 and B3) in Iran

Pathogens and Disease

2016

Comparison of neutralizing antibody titers against outbreak-associated measles genotypes (D4, H1 and B3) in Iran

FEMS Pathogens and Disease

2016

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

BMC systems biology

2015

Proteome analysis of ground state pluripotency

Scientific reports

2015

A universal and robust integrated platform for the scalable production of human cardiomyocytes from pluripotent stem cells

Stem cells translational medicine

2015

Epidemiological study of cutaneous leishmaniasis in Khatam, Yazd province, 2004-2013

Paramedical Sciences and Military Health

2015

Inhibition of TGFβ signaling promotes ground state pluripotency

Stem Cell Reviews and Reports

2014

Natural biased coin encoded in the genome determines cell strategy

PloS one

2014

ARYANA: Aligning Reads by Yet Another Approach

BMC bioinformatics

2014

Intra-peritoneal and intra-rectal immunogenicity induced by rotavirus virus like particles 2/6/7 in mice

Microbial pathogenesis

2014

Implementation of a national measles elimination program in Iran: phylogenetic analysis of measles virus strains isolated during 2010–2012 outbreaks

PloS one

2014

Molecular Tracing of mES Cell Derivation from Blastocysts in The Presence of TGF-β and ERK Signaling Inhibitors.

Cell Journal (Yakhteh)

2013

Enhancer DNA Methylation in Differentiated and Stem Cells.

Cell Journal (Yakhteh)

2013

Small Molecule Induction of Human Embryonic Stem Cells Towards Definitive Endoderm.

Cell Journal (Yakhteh)

2013

Opioid receptors control viral replication in the airways

Critical care medicine

2013

The oncolytic effect of respiratory syncytial virus (RSV) in human skin cancer cell line, A431

Iranian Red Crescent Medical Journal

2013

Induction of apoptosis by Trichostatin A in human breast cancer cell lines: involvement of 15-Lox-1

Tumor Biology

2013

Local IL-17A potentiates early neutrophil recruitment to the respiratory tract during severe RSV infection

PloS one

2013

Huis in ‘t Veld R, Walk J, Meerding J, Coenjaerts F, Bont L, Boes M. Local IL-17A potentiates early neutrophil recruitment to the respiratory tract during severe RSV infection

PLoS One

2013

Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm

Stem cells and development

2012

The Use of Oral Fluid Samples Spotted on Filter Paper for the Detection of Measles Virus Using Nested RT‐PCR

Journal of clinical laboratory analysis

2012

Molecular epidemiology of measles virus before and after the 2003 mass vaccination campaign for measles/rubella in Iran

Iranian journal of public health

2011

Molecular epidemiology of human respiratory syncytial virus in Iran.

Acta virologica

2011

Molecular epidemiology of measles virus in Iran 2009–2010: first detection of measles genotype H1

Journal of medical virology

2011

Genetic diversity in the G protein gene of human respiratory syncytial virus among Iranian children with acute respiratory symptoms

Iranian journal of pediatrics

2011

Molecular epidemiology of human respiratory syncytial virus in Iranian children less than 5 years in 2007: a study on 72 cases.

Tehran University Medical Journal

2010

Sequence and phylogenetic analyses of neuraminidase gene of Iranian seasonal influenza H1N1 viruses from 2005-2009 and corresponding vaccine strains

Acta Virol

2010

The effects of radiation leakage of microwave oven on body weight, cortisol, thyroid hormones and lipid profile in immature mice.

Tehran University Medical Journal

2010

Detection of hepatitis G virus envelope protein E2 antibody in blood donors

International Journal of Infectious Diseases

2008

Seroepidemiology of Human Parvovirus B19 in 5-25 Year Old Age People in Iran

Iranian Journal of Public Health

2008

Seroepidemiology of human Parvovirus B19 in 5-25 year old age people in Iran

Iranian Journal of Public Health

2008

Comparison of multiplex nested RT-PCR with virus isolation for detection of influenza viruses A and B

Iranian Journal of Public Health

2007

Evaluation of Rubella IgG Antibodies among High School Girls in Uremia City

Iranian Journal of Public Health

2003